Apr 12, 2026 · What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred …

FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.

Nov 14, 2018 · BEAST v1.10.4 fixes a bug when trying to specify a burnin on the command line version of LogCombiner. It also introduces two new command line options specific to BEAGLE v3.1 ( …

Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download and …

This realisation includes all the transitions (Markov jumps) between states along phylogenetic branches and the time (Markov rewards) spent in the states between two transitions. This tutorial discusses …

The BEAUti & The BEAST software package Bayesian Evolutionary Analysis Utility (BEAUti) BEAUti is a graphical user-interface (GUI) application for generating BEAST XML files. It is distributed in the …

BEAST XML Elements The following is a list of valid elements in a beast file.

Analysing BEAST output using Tracer Analysing BEAST output files using Tracer Analysing BEAST output using Tracer This document provides a step-by-step tutorial to analysing the output of BEAST …

Custom substitution models BEAUti provides a fairly standard selection of substitution models, but BEAST can deal with a wide range of possible models through XML specification. This can be done …

This tutorial can be easily adapted to display and summarize annotated summary BEAST trees and prepare publication-ready figures for other datasets. FigTree - this is an application for displaying and …